Difference between revisions of "FlyBase:Help"

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====Tools====
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__TOC__
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=FlyBase Help=
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==[[FlyBase:FlyBase Help Index | FlyBase Help Index]]==
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==Tools==
 
* [[FlyBase:Tools Overview|Tools Overview]]
 
* [[FlyBase:Tools Overview|Tools Overview]]
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* [[FlyBase:JBrowse|FlyBase JBrowse Help]]
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* [[FlyBase:JBrowse Tracks|JBrowse Tracks]]
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* [[FlyBase:Differences between JBrowse and GBrowse on FlyBase | Feature differences between JBrowse and GBrowse on FlyBase]]
  
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* Data Submission to FlyBase
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==Downloads==
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**[[FlyBase:Personal communications to FlyBase |Personal communications to FlyBase]]
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* [[FlyBase:Downloads Overview|Downloads Overview]]
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**[[FlyBase:Links to and from FlyBase (RefMan F)|Links to and from FlyBase (RefMan F)]]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=bulkdata7.html&title=Current%20Release Precomputed data files for the current release]
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**[[FlyBase:Author Guidelines|Author Guidelines]]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=archivedata3.html&title=Archived%20Releases Archived data files for recent releases]
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* [[Media:DmelMapTable.160615c.xlsx | Map conversion]]
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:'''FTP site'''
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::*[ftp://ftp.flybase.org/releases/ Index of releases]
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::*[ftp://ftp.flybase.org/genomes/ Index of Genomes]
  
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====FIles====
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==External Resource Links==
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*[http://flybase.org/static_pages/docs/datafiles.html Files Overview]
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* [[FlyBase:External Resources|All External Resources]]
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** [[FlyBase:Drosophila Network Resources| Curated list of Drosophila Online Resources]]
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** [[FlyBase:Drosophila Material Resources|Curated list of Drosophila Material Resources (Reagents)]]
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** [[FlyBase:CRISPR|CRISPR links page]]
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** [[FlyBase:ScRNA-Seq|ScRNA-Seq links page]]
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** [[FlyBase:RNAi|RNAi links page]]
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** [[FlyBase:Stocks|Stocks links page]]
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** [[FlyBase:Antibodies|Antibodies links page]]
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** [[FlyBase:Neuroscience|Neuroscience links page]]
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** [[FlyBase:Model Organism Databases|Model Organism Databases links page]]
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** [[FlyBase:Images|Images links page]]
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** [[FlyBase:Maps|Maps links page]]
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** [http://www.flyrnai.org/tools/protocols/web/| DRSC Protocols page]
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** [[FlyBase:Papers with technical advances|Papers with technical advances links page]]
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** [[FlyBase:GSEA|Gene Set Enrichment Tools links page]]
  
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====Species====
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==Community==
  
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====Documents====
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* [[FlyBase:Drosophila Community Service Award| Drosophila Community Service Award]]
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**[[FlyBase:About|About FlyBase]]
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* [http://flybase.org/submission/publication/ Fast Track Your Paper]
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**[[FlyBase:RefMan G.|FlyBase Curation Documentation (RefMan G)]]
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* [[FlyBase:Fly Lab List| Fly Lab List]]
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***[[FlyBase:Nontraditional alleles |Nontraditional alleles]]
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* [[FlyBase:Community Advisory Group| FlyBase Community Advisory Group]]
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***[[FlyBase:Controlled vocabularies used by FlyBase |Controlled Vocabularies used by FlyBase]]
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* [https://groups.google.com/forum/#!forum/flybase FlyBase Forum]
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***[[FlyBase:Gene Ontology (GO) Annotation |Gene Ontology (GO) Annotation]]
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* [https://flybase.org/community/newsletter FlyBase Newsletter]
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***[[FlyBase:Gene Model Annotation Guidelines |Gene Model Annotation Guidelines]]
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* [http://www.bio.net/hypermail/dros/ bionet.dros]
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***[[FlyBase:Annotation Evidence Score |Annotation Evidence Score]]
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* [[FlyBase:Fly Board| Fly Board]]
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***[[FlyBase:Computed Feature type of genes |Computed Feature type of genes]]
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* [[FlyBase:NIH Funding| NIH Funding]]
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***[[FlyBase:Computed cytological data |Computed cytological data]]
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* [https://flyslackco.slack.com/ FlySlack]
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***[[FlyBase:Nomenclature|Nomenclature]]
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* [[FlyBase:Gene_Snapshots| Gene Snapshots]]
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**[[FlyBase:RefMan F.|Links to and from FlyBase (RefMan F)]]
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* [https://twitter.com/FlyBaseDotOrg Twitter (@FlyBaseDotOrg)]
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***[[FlyBase:Identifiers| FlyBase Identifiers (FBIDs)]]
 
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***[[FlyBase:Links to and from FlyBase (RefMan F)|Links to and from FlyBase (RefMan F)]]
 
  
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====Resources====
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==Species==
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** [[FlyBase:Model Organism Databases|Model Organism Databases]]
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* [[FlyBase:Phylogeny|Phylogeny]]
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** [[FlyBase:Stock Collections|Stock Collections]]
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* [http://flybase.org/static/sequenced_species Original 12 Sequenced Drosophila Species]
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** [[FlyBase:Vectors and Constructs|Vectors and Constructs]]
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* [http://flybase.org/maps/synteny Synteny Table for Original 12 Sequenced Drosophila Species]
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** [[FlyBase:All Resources|All Resources]]
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* [http://flybase.org/static/Drosophilidae Color Illustrations of more than 100 Drosophila Species]
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*** [[FlyBase:Drosophila Network Resources|Drosophila Network Resources]]
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* [[FlyBase:Abbreviations|Abbreviations]]
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*** [[FlyBase:Drosophila Material Resources|Drosophila Material Resouces (Reagents)]]
 
  
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====News====
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==About FlyBase==
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**[[FlyBase:FlyBase News|FlyBase News]]
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* [http://flybase.org/cgi-bin/get_static_page.pl?file=release_notes.html&title=Release%20Notes Release Notes]
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**[[FlyBase:FlyBase Positions|FlyBase Positions]]
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* [http://flybase.org/static/new-this-release New in Release]
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**[[FlyBase:Meetings|Meetings]]
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* [http://flybase.org/static/release_schedule Release Schedule]
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**[[FlyBase:Courses|Courses]]
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* [[FlyBase:FlyBase Positions| FlyBase Positions]]
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**[[FlyBase:Fly Board|Fly Board]]
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* [[FlyBase:About#Citing_FlyBase| Citing FlyBase]]
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**[[FlyBase:White Papers|White Papers]]  
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* [[FlyBase:About#FlyBase_Consortium| FlyBase Consortium]]
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**[[FlyBase:Funding|Funding]]
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* [[FlyBase:Overview| FlyBase Overview]]
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**bionet.dros link
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* [[FlyBase:About#FlyBase_Publications| FlyBase Publications]]
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* [[FlyBase:About#FlyBase_Support| FlyBase Support]]
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* [[FlyBase:FlyBase Website Access Fee FAQ| FlyBase Website Access Fee FAQ]]
  
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====Help====
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==Help==
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**[[FlyBase:FAQ|FAQ]]
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* [[FlyBase:New to Flies?|Useful links if you are new to Flies]]
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**[[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase Guides: Pamphlets and Powerpoints]]
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* [https://wiki.flybase.org/wiki/FlyBase:Tweetorial FlyBase Tweetorials]
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**[[FlyBase:New to Flies?|New to Flies?]]
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* [https://www.youtube.com/channel/UCG-KSNq46vkezAwbrVQojYA/videos FlyBase Video Tutorials]
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* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
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* [[FlyBase:Controlled vocabularies used by FlyBase|Controlled vocabularies used by FlyBase]]
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* [[FlyBase:Author Guidelines|Author Guidelines]]
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* [[FlyBase:Personal communications to FlyBase|Personal communications to FlyBase]]
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* [[FlyBase:FlyBase Guides: Pamphlets and Powerpoints|FlyBase pamphlets, powerpoints and posters]]
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* [https://flybase.org/contact/email Contact FlyBase]
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* [[FlyBase:Vectors and Constructs|Commonly used vectors and constructs]]
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* [[FlyBase:FAQ|FAQs]]
  
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* Data Submission
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==FlyBase Report Help==
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** [[ Fast Track Your Paper|Fast Track Your Paper ]]
 
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** [[ Submit Personal Communication|Submit Personal Communication ]]
 
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** [[ Add a New Person|Add a New Person ]]
 
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** [[ Update a Person|Update a Person ]]
 
  
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*Report Help
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'''FlyBase Report Help and Documentation'''
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** [[FlyBase:Genes|Genes]]
 
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** [[FlyBase:Alleles|Alleles]]
 
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** [[FlyBase:References|References]]
 
  
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====General====
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* [[FlyBase:FlyBase Help Index#Report Help | Field-by-field guides to FlyBase reports]]
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#*[[FlyBase:Identifiers|FlyBase IDs]]
 
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#*[[FlyBase:Links to and from FlyBase|Links to and from FlyBase]]
 
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#*[[FlyBase:Zotero support in FlyBase|Zotero support in FlyBase]]
 
  
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==Documentation==
  
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'''Nomenclature'''
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*[[FlyBase:Nomenclature|Nomenclature Guidelines]]
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*[[FlyBase:Nontraditional alleles |Nontraditional alleles]]
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'''Gene Model Annotation'''
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*[[FlyBase:Gene Model Annotation Guidelines|Gene Model Annotation Guidelines (2012)]]
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*[[FlyBase:Gene_Model_Annotation_Guidelines#G.7._Gene_Model_Annotation_Guidelines_.282007.29|Gene Model Annotation Guidelines (2007)]]
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*[[FlyBase:Annotation Evidence Score|What does the annotation evidence score mean?]]
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'''GO Annotation'''
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*[[FlyBase:Gene Ontology (GO) Annotation |Classification of Gene Products using Gene Ontology (GO) terms]]
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'''Computed Fields'''
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*[[FlyBase:Computed Feature type of genes | Computed Feature type of genes]]
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*[[FlyBase:Computed cytological data | Computed cytological data]]
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'''Links to and from FlyBase'''
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*[[FlyBase:RefMan F.|Instructions for creating links to and from FlyBase]]
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==General==
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* [[FlyBase:Fly Board|Fly Board and White Papers]]
  
 
[[Category:Help]]
 
[[Category:Help]]
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==Tools for Archived Instances of FlyBase==
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{| class="wikitable" style="text-align: center; color: red; margin: auto;"
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!colspan="1"|Warning
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|-
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|rowspan="1"|Information about GBrowse is only relevant to users of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05.
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For users working with the current release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse.
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|}
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* [[FlyBase:GBrowse|FlyBase GBrowse Help]]
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* [[FlyBase:GBrowse Tracks|GBrowse Tracks]]

Latest revision as of 17:44, 30 October 2024


FlyBase Help

FlyBase Help Index

Tools

Downloads

FTP site

External Resource Links

Community

Species

About FlyBase

Help

FlyBase Report Help

FlyBase Report Help and Documentation

Documentation

Nomenclature

Gene Model Annotation

GO Annotation

Computed Fields

Links to and from FlyBase

General


Tools for Archived Instances of FlyBase

Warning
Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.

For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse.

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