Difference between revisions of "FlyBase:Using FTP Archives"
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This page will contain a help guide for using FTP archives. | This page will contain a help guide for using FTP archives. | ||
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[[File:MainFTPData.png|frameless|800px|The Main Data Archives section of the Archived Releases page]] | [[File:MainFTPData.png|frameless|800px|The Main Data Archives section of the Archived Releases page]] | ||
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| + | ==Genome archives== | ||
[[File:Index_of_FTP_genomes_archive.png|left|thumb|100px|Index of the FTP genomes archive.]] | [[File:Index_of_FTP_genomes_archive.png|left|thumb|100px|Index of the FTP genomes archive.]] | ||
| − | The '''[http://ftp.flybase.net/genomes/ FTP genomes archive]''' link holds genomic sequence data from many Drosophilid species in [https://useast.ensembl.org/info/website/upload/gff.html GFF, GTF], and [https://www.ncbi.nlm.nih.gov/WebSub/html/help/fasta.html FASTA] files formats. These are organized by species, so if you are interested in a particular non-melanogaster Drosophilid, this is the easiest way to find data specific to that species. Precomputed files were never made for non-melanogaster species, so they are not available here. | + | [[File:FTP_archive_for_D_grimshawi_FB2017_01.png|right|thumb|200px|Index of the D. grimshawi, FB2017_01 archive.]] |
| + | The '''[http://ftp.flybase.net/genomes/ FTP genomes archive]''' link holds genomic sequence data from many Drosophilid species in [https://useast.ensembl.org/info/website/upload/gff.html GFF, GTF], and [https://www.ncbi.nlm.nih.gov/WebSub/html/help/fasta.html FASTA] files formats. These are organized by species, so if you are interested in a particular non-melanogaster Drosophilid, this is the easiest way to find data specific to that species. | ||
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| + | The fullname (e.g. Drosophila grimshawi) and four-letter FlyBase species abbreviation (e.g. Dgri) are different folders, but contain the same files within them. | ||
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| + | Precomputed files were never made for non-melanogaster species, so they are not available here. | ||
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| + | ==Release archives== | ||
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Revision as of 19:00, 21 February 2024
This page will contain a help guide for using FTP archives.
FlyBase is no longer supporting the archive servers, which replicated the website as it existed at the time of archiving. However, all of the data behind every release is available at our FTP archives, which you can reach on the Archived Releases page, from the Downloads tab of the menu bar.
Genome archives
The FTP genomes archive link holds genomic sequence data from many Drosophilid species in GFF, GTF, and FASTA files formats. These are organized by species, so if you are interested in a particular non-melanogaster Drosophilid, this is the easiest way to find data specific to that species.
The fullname (e.g. Drosophila grimshawi) and four-letter FlyBase species abbreviation (e.g. Dgri) are different folders, but contain the same files within them.
Precomputed files were never made for non-melanogaster species, so they are not available here.
Release archives
The FTP releases archive link holds data organized by release, for both D. melanogaster and non-melanogaster Drosophilids.
Between these two links, there are multiple redundant ways to reach the same file.