Difference between revisions of "FlyBase:Differences between JBrowse and GBrowse on FlyBase"
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= Table of Differences between features available in FlyBase JBrowse and GBrowse = | = Table of Differences between features available in FlyBase JBrowse and GBrowse = | ||
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| + | {| class="wikitable" style="text-align: center; color: red; margin: auto;" | ||
| + | !colspan="1"|Warning | ||
| + | |- | ||
| + | |rowspan="1"|Information about GBrowse is only relevant to users of an [http://flybase.org/downloads/archivedata archived] instance of FlyBase earlier than FB2022_05. | ||
| + | For users working with the current release at [http://flybase.org/ flybase.org], please see our page about [[FlyBase:JBrowse]], the genome viewer that replaced GBrowse. | ||
| + | |} | ||
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{|cellpadding=3 | {|cellpadding=3 | ||
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|style="background: #efefef; white-space: nowrap;"| '''Drosophila Species''' ||style="background: #efefef;"| ||style="background: #efefef;"| | |style="background: #efefef; white-space: nowrap;"| '''Drosophila Species''' ||style="background: #efefef;"| ||style="background: #efefef;"| | ||
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| − | |style="white-space: nowrap;"| Non-Dmel species available || Yes ||style="white-space: nowrap;"| | + | |style="white-space: nowrap;"| Dsim, Dpse, Dana, Dvir available || Yes ||style="white-space: nowrap;"| Yes |
| + | |- | ||
| + | |style="white-space: nowrap;"| Other Non-Dmel species available || Yes ||style="white-space: nowrap;"| | ||
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|- | |- | ||
|style="background: #efefef; white-space: nowrap;"| '''General Features''' ||style="background: #efefef;"| ||style="background: #efefef;"| | |style="background: #efefef; white-space: nowrap;"| '''General Features''' ||style="background: #efefef;"| ||style="background: #efefef;"| | ||
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|style="background: #efefef; white-space: nowrap;"| '''Data Available''' ||style="background: #efefef;"| ||style="background: #efefef;"| | |style="background: #efefef; white-space: nowrap;"| '''Data Available''' ||style="background: #efefef;"| ||style="background: #efefef;"| | ||
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| − | |style="white-space: nowrap;"| | + | |style="white-space: nowrap;"| Transcription Start Sites || Yes ||style="white-space: nowrap;"| subset |
| + | |- | ||
| + | |style="white-space: nowrap;"| Genome Variation || ||style="white-space: nowrap;"| Yes | ||
|- | |- | ||
| − | |style="white-space: nowrap;"| | + | |style="white-space: nowrap;"| sgRNA Reagents || subset ||style="white-space: nowrap;"| Yes |
|- | |- | ||
|style="white-space: nowrap;"| Chromatin domains || Yes ||style="white-space: nowrap;"| | |style="white-space: nowrap;"| Chromatin domains || Yes ||style="white-space: nowrap;"| | ||
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|style="white-space: nowrap;"| Microarray features || Yes ||style="white-space: nowrap;"| | |style="white-space: nowrap;"| Microarray features || Yes ||style="white-space: nowrap;"| | ||
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| − | |||
| − | |||
| − | |||
|- | |- | ||
|style="white-space: nowrap;"| Aberrations || Yes ||style="white-space: nowrap;"| subset | |style="white-space: nowrap;"| Aberrations || Yes ||style="white-space: nowrap;"| subset | ||
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|style="white-space: nowrap;"| BAC data || Yes ||style="white-space: nowrap;"| | |style="white-space: nowrap;"| BAC data || Yes ||style="white-space: nowrap;"| | ||
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| − | |style="background: #efefef; white-space: nowrap;"| '''Complete list of track differences''' ||style="background: #efefef;"| ||style="background: #efefef;"| | + | |style="background: #efefef; white-space: nowrap;"| [[FlyBase:Complete list of GBrowse/JBrowse Track Differences | '''Complete list of track differences''']] ||style="background: #efefef;"| ||style="background: #efefef;"| |
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|} | |} | ||
<br/> | <br/> | ||
Latest revision as of 17:37, 14 December 2022
Table of Differences between features available in FlyBase JBrowse and GBrowse
| Warning |
|---|
| Information about GBrowse is only relevant to users of an archived instance of FlyBase earlier than FB2022_05.
For users working with the current release at flybase.org, please see our page about FlyBase:JBrowse, the genome viewer that replaced GBrowse. |
| Feature | Present in GBrowse (?) | Present in JBrowse (?) |
|---|---|---|
| Track Selection | ||
| Tracks selection panel on same page as genome browser | Yes | |
| Uploadable files | GFF, bed | GFF, bed,bigWig |
| Drosophila Species | ||
| Dsim, Dpse, Dana, Dvir available | Yes | Yes |
| Other Non-Dmel species available | Yes | |
| General Features | ||
| Option to flip strand orientation | Yes | |
| Option to save view and share as a URL | Yes | |
| Choose normal, compressed, or compact view for tracks | Yes | |
| Option to pin a track to the top of the view | Yes | |
| Option to create combined tracks | Yes | |
| Ability to search for sequence strings | Yes | |
| Retrieve Region Data in alternative format | ||
| Retrieve decorated FASTA | Yes | |
| HTML table view available | Yes | |
| Save region data as BED file or Sequin Table (both offer GFF) | Yes | |
| Data Available | ||
| Transcription Start Sites | Yes | subset |
| Genome Variation | Yes | |
| sgRNA Reagents | subset | Yes |
| Chromatin domains | Yes | |
| Gene predictions | Yes | |
| Protein similarity | Yes | |
| Microarray features | Yes | |
| Aberrations | Yes | subset |
| BAC data | Yes | |
| Complete list of track differences |