Difference between revisions of "FlyBase:Maps"

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FlyBase offers a downloadable [http://flybase.org/w/images/a/a2/DmelMapTable.xlsx '''spreadsheet'''] that lists the genomic coordinates, cytological (polytene band) position and genetic map position for all annotated D. melanogaster genes. Information for each chromosome arm is available on a separate tab of the spreadsheet. For both cytological and genetic map positions, we report both experimentally determined values reported in the literature as well as FlyBase computational estimates. For genetic map positions, we also provide an alternative computational estimate based on the mapping of millions of SNPs from thousands or recombination events [http://flybase.org/reports/FBrf0219727 '''Comeron et. al., 2012'''].
 
FlyBase offers a downloadable [http://flybase.org/w/images/a/a2/DmelMapTable.xlsx '''spreadsheet'''] that lists the genomic coordinates, cytological (polytene band) position and genetic map position for all annotated D. melanogaster genes. Information for each chromosome arm is available on a separate tab of the spreadsheet. For both cytological and genetic map positions, we report both experimentally determined values reported in the literature as well as FlyBase computational estimates. For genetic map positions, we also provide an alternative computational estimate based on the mapping of millions of SNPs from thousands or recombination events [http://flybase.org/reports/FBrf0219727 '''Comeron et. al., 2012'''].
  
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= Polytene Chromosome Images =
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= D. melanogaster Chromosome Images =
  
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This page is in progress. Nice images of polytene chromosomes (and other maps) for various Drosophila species will be available shortly.
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{| class="wikitable sortable"
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|-
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! Species !! Chromosome !! Muller Element !! illustration !! micrograph !! annotation !! References !! File !! Comments
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|-
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| style="white-space: nowrap;" | D. melanogaster || X || A || yes || no || no || [http://flybase.org/reports/FBrf0004055 '''Bridges 1938'''], [http://flybase.org/reports/FBrf0003150 '''Bridges 1935'''] || [[:File:Dmel_X_Bridges.png]] || Original illustrations.
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|-
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| D. melanogaster || 2L || B || yes || no || no || [http://flybase.org/reports/FBrf0005766 '''Bridges 1942'''], [http://flybase.org/reports/FBrf0003150 '''Bridges 1935'''] || [[:File:Dmel_2L_Bridges.png]] || Original illustrations.
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|-
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| D. melanogaster || 2R || C || yes || no || no || [http://flybase.org/reports/FBrf0004320 '''Bridges and Bridges 1939'''], [http://flybase.org/reports/FBrf0003150 '''Bridges 1935'''] || [[:File:Dmel_2R_Bridges.png]] || Original illustrations.
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|-
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| D. melanogaster || 3L || D || yes || no || no || [http://flybase.org/reports/FBrf0005488 '''Bridges 1941'''], [http://flybase.org/reports/FBrf0003150 '''Bridges 1935'''] || [[:File:Dmel_3L_Bridges.png]] || Original illustrations.
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|-
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| D. melanogaster || 3R || E || yes || no || no || [http://flybase.org/reports/FBrf0005486 '''Bridges 1941'''], [http://flybase.org/reports/FBrf0003150 '''Bridges 1935'''] || [[:File:Dmel_3R_Bridges.png]] || Original illustrations.
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|-
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| D. melanogaster || 4 || F || yes || no || no || [http://flybase.org/reports/FBrf0006183 '''Slizynski 1944'''] || [[:File:Dmel_4_Slizynski.png]] || Original illustrations.
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|-
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| D. melanogaster || X || A || yes || yes || no || [http://flybase.org/reports/FBrf0028326.html '''Lefevre 1976'''] || [[:File:Dmel_X_Lefevre.png]] || Original electron micrographs.
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|-
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| D. melanogaster || 2L || B || yes || yes || no || [http://flybase.org/reports/FBrf0028326.html '''Lefevre 1976'''] || [[:File:Dmel_2L_Lefevre.png]] || Original electron micrographs.
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|-
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| D. melanogaster || 2R || C || yes || yes || no || [http://flybase.org/reports/FBrf0028326.html '''Lefevre 1976'''] || [[:File:Dmel_2R_Lefevre.png]] || Original electron micrographs.
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|-
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| D. melanogaster || 3L || D || yes || yes || no || [http://flybase.org/reports/FBrf0028326.html '''Lefevre 1976'''] || [[:File:Dmel_3L_Lefevre.png]] || Original electron micrographs.
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|-
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| D. melanogaster || 3R || E || yes || yes || no || [http://flybase.org/reports/FBrf0028326.html '''Lefevre 1976'''] || [[:File:Dmel_3R_Lefevre.png]] || Original electron micrographs.
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|-
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| D. melanogaster || 4 || F || yes || yes || no || [http://flybase.org/reports/FBrf0028326.html '''Lefevre 1976'''] || [[:File:Dmel_4_Lefevre.png]] || Original electron micrographs.
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|-
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| D. melanogaster || X || A || yes || yes || yes || . || [[:File:Dmel_X.png]] || Genomic, genetic and cytological positions indicated for select genes.
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|-
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| D. melanogaster || 2L || B || yes || yes || yes || . || [[:File:Dmel_2L.png]] || Genomic, genetic and cytological positions indicated for select genes.
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|-
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| D. melanogaster || 2R || C || yes || yes || yes || . || [[:File:Dmel_2R.png]] || Genomic, genetic and cytological positions indicated for select genes.
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|-
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| D. melanogaster || 3L || D || yes || yes || yes || . || [[:File:Dmel_3L.png]] || Genomic, genetic and cytological positions indicated for select genes.
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|-
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| D. melanogaster || 3R || E || yes || yes || yes || . || [[:File:Dmel_3R.png]] || Genomic, genetic and cytological positions indicated for select genes.
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|-
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| D. melanogaster || 4 || F || yes || yes || yes || . || [[:File:Dmel_4.png]] || Genomic, genetic and cytological positions indicated for select genes.
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|-
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| D. melanogaster || Y || . || yes || yes || yes || [http://flybase.org/reports/FBrf0036525.html '''Kennison 1981'''], [http://flybase.org/reports/FBrf0037663.html '''Hazelrigg et. al., 1982'''], [http://flybase.org/reports/FBrf0039037.html '''Gatti and Pimpinelli 1983'''] || [[:File:Dmel_Y.jpg]] || Sequence from massive assembly gaps is not represented in the GBrowse view.
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|}

Revision as of 16:06, 18 September 2015

Genetic, Cytological and Genomic Map Coordinates for D. melanogaster Genes

FlyBase offers a downloadable spreadsheet that lists the genomic coordinates, cytological (polytene band) position and genetic map position for all annotated D. melanogaster genes. Information for each chromosome arm is available on a separate tab of the spreadsheet. For both cytological and genetic map positions, we report both experimentally determined values reported in the literature as well as FlyBase computational estimates. For genetic map positions, we also provide an alternative computational estimate based on the mapping of millions of SNPs from thousands or recombination events Comeron et. al., 2012.

D. melanogaster Chromosome Images

Species Chromosome Muller Element illustration micrograph annotation References File Comments
D. melanogaster X A yes no no Bridges 1938, Bridges 1935 File:Dmel_X_Bridges.png Original illustrations.
D. melanogaster 2L B yes no no Bridges 1942, Bridges 1935 File:Dmel_2L_Bridges.png Original illustrations.
D. melanogaster 2R C yes no no Bridges and Bridges 1939, Bridges 1935 File:Dmel_2R_Bridges.png Original illustrations.
D. melanogaster 3L D yes no no Bridges 1941, Bridges 1935 File:Dmel_3L_Bridges.png Original illustrations.
D. melanogaster 3R E yes no no Bridges 1941, Bridges 1935 File:Dmel_3R_Bridges.png Original illustrations.
D. melanogaster 4 F yes no no Slizynski 1944 File:Dmel_4_Slizynski.png Original illustrations.
D. melanogaster X A yes yes no Lefevre 1976 File:Dmel_X_Lefevre.png Original electron micrographs.
D. melanogaster 2L B yes yes no Lefevre 1976 File:Dmel_2L_Lefevre.png Original electron micrographs.
D. melanogaster 2R C yes yes no Lefevre 1976 File:Dmel_2R_Lefevre.png Original electron micrographs.
D. melanogaster 3L D yes yes no Lefevre 1976 File:Dmel_3L_Lefevre.png Original electron micrographs.
D. melanogaster 3R E yes yes no Lefevre 1976 File:Dmel_3R_Lefevre.png Original electron micrographs.
D. melanogaster 4 F yes yes no Lefevre 1976 File:Dmel_4_Lefevre.png Original electron micrographs.
D. melanogaster X A yes yes yes . File:Dmel_X.png Genomic, genetic and cytological positions indicated for select genes.
D. melanogaster 2L B yes yes yes . File:Dmel_2L.png Genomic, genetic and cytological positions indicated for select genes.
D. melanogaster 2R C yes yes yes . File:Dmel_2R.png Genomic, genetic and cytological positions indicated for select genes.
D. melanogaster 3L D yes yes yes . File:Dmel_3L.png Genomic, genetic and cytological positions indicated for select genes.
D. melanogaster 3R E yes yes yes . File:Dmel_3R.png Genomic, genetic and cytological positions indicated for select genes.
D. melanogaster 4 F yes yes yes . File:Dmel_4.png Genomic, genetic and cytological positions indicated for select genes.
D. melanogaster Y . yes yes yes Kennison 1981, Hazelrigg et. al., 1982, Gatti and Pimpinelli 1983 File:Dmel_Y.jpg Sequence from massive assembly gaps is not represented in the GBrowse view.
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