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FlyBase:Citing FlyBase

Steven marygold — Wed, 02 Sep 2026 06:20:18 GMT

FlyBase:Papers with technical advances

Aoife Larkin — Tue, 01 Sep 2026 15:30:19 GMT

2026

FlyBase:Balancer/Genotype variant Report

Steven marygold — Tue, 11 Aug 2026 12:12:31 GMT

General Information

FlyBase:Papers with technical advances

Aoife Larkin — Mon, 03 Aug 2026 15:55:18 GMT

Jul 2026

← Older revision		Revision as of 06:20, 2 September 2026
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−	FlyBase is a [[FlyBase:About#FlyBase_Consortium\|consortium]] of more than 30 curators, developers and PIs from four universities, supported by [[FlyBase:About#~~Grants_Supporting_FlyBase~~\|~~grants~~]] from the NIH and other organizations as well as users' website access fees. As for all scientists, citations are critical for demonstrating the value of our work to our funding sources. Therefore, if you have used FlyBase during your research project, we urge you to cite us in your published work.	+	FlyBase is a [[FlyBase:About#FlyBase_Consortium\|consortium]] of more than 20 curators, developers and PIs from four universities, supported by [[FlyBase:About#Funding_Sources_Supporting_FlyBase\|funds]] from the NIH and other organizations as well as users' website access fees. As for all scientists, citations are critical for demonstrating the value of our work to our funding sources. Therefore, if you have used FlyBase during your research project, we urge you to cite us in your published work.

	[[File:Groupphoto2023.jpg\|thumb\|400px\|upright\|Members of the FlyBase Consortium in 2023]]		[[File:Groupphoto2023.jpg\|thumb\|400px\|upright\|Members of the FlyBase Consortium in 2023]]

← Older revision		Revision as of 15:30, 1 September 2026
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	===2026===		===2026===
		+	==== Aug 2026====
		+	{\| class="wikitable"
		+	\|-
		+	! ''Author description of technical advance''!!''Title''!!''Journal''!!''PubMed ID''!! ''FBrf number''
		+	\|-
		+	\| We show conventional CRISPR/Cas-HDR genome editing frequently (~50% of editing events) causes unintended genome integration of the HDR template vector across loci and editing designs. A new vector, pVID, enables these HDR template integration events to be detected and excluded.\|\|Highly frequent undesired insertional mutagenesis during Drosophila genome editing.\|\|PLoS Genet.\|\|[https://pubmed.ncbi.nlm.nih.gov/42424384 42424384 ]\|\|[https://flybase.org/reports/FBrf0265951 FBrf0265951]
		+	\|- bgcolor="lightgrey"
		+	\| Tested lssmScarlet3 as an imaging tool in Drosophila brain. (Used jGCaMP8m in the paper.)\|\|Long-Stokes-Shift mScarlet3 as a Structural Marker for Two-Photon Imaging.\|\|MicroPubl Biol\|\|[https://pubmed.ncbi.nlm.nih.gov/42540142 42540142 ]\|\|[https://flybase.org/reports/FBrf0265995 FBrf0265995]
		+	\|-
		+	\|}

	==== Jul 2026====		==== Jul 2026====

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 |'''Described as Balancer'''	 || This field is only displayed on an individual report if the genotype variant chromosome has been reported as being usable as a balancer. The publication(s) that reported this information are listed, where available.
 |-
-|'''Alleles'''	 || Allele(s) that are carried on the balancer/genotype variant.
+|'''Carries Alleles'''	 || Allele(s) that are carried on the balancer/genotype variant. (Note that any alleles caused by an aberration breakpoint are not included here but are listed in the 'Causes Alleles' field of the relevant parent aberration report.)
 Clicking on an allele symbol will take you to the relevant Allele Report.

← Older revision		Revision as of 15:55, 3 August 2026
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	===2026===		===2026===
		+
		+	==== Jul 2026====
		+	{\| class="wikitable"
		+	\|-
		+	! ''Author description of technical advance''!!''Title''!!''Journal''!!''PubMed ID''!! ''FBrf number''
		+	\|-
		+	\| New genetically encoded-metabolic fluorescent biosensors for ATP and NADH/NAD+ ratio (transgenes).\|\|NAD[+] supply and redox state limit developmental speed in the Drosophila eye.\|\|EMBO J.\|\|[https://pubmed.ncbi.nlm.nih.gov/42129544 42129544 ]\|\|[https://flybase.org/reports/FBrf0265638 FBrf0265638]
		+	\|- bgcolor="lightgrey"
		+	\| Digital chemistry is used in phenotype-driven QSAR.\|\|Chemical programming of kinase inhibitors in a modular chemputer-based system.\|\|Commun. Biol.\|\|[https://pubmed.ncbi.nlm.nih.gov/41896327 41896327 ]\|\|[https://flybase.org/reports/FBrf0265712 FBrf0265712]
		+	\|-
		+	\| We describe two ExM-based protocols for Drosophila tissues: ExM (~4x expansion) and pan-ExM (~12-16x). ExM enables super-resolution imaging of immunofluorescent labels, while pan-ExM reveals ultrastructural features but offers limited specific protein detection.\|\|Super-resolution imaging of cell death in Drosophila tissues via expansion and pan-expansion microscopy.\|\|Methods Cell Biol.\|\|[https://pubmed.ncbi.nlm.nih.gov/42276709 42276709 ]\|\|[https://flybase.org/reports/FBrf0265637 FBrf0265637]
		+	\|- bgcolor="lightgrey"
		+	\| High-throughput, whole-brain fluorescence imaging assays in Drosophila melanogaster ideal for observing and mechanistically understanding spreading depolarization.\|\|Whole brain fluorescence imaging in Drosophila reveals spreading depolarization and its initiation, propagation, and resilience dynamics.\|\|iScience\|\|[https://pubmed.ncbi.nlm.nih.gov/42375524 42375524 ]\|\|[https://flybase.org/reports/FBrf0265719 FBrf0265719]
		+	\|-
		+	\| Three new cell lines derived from larvae of Drosophila willistoni, available as sublines both naturally-infected with Wolbachia strain wWil and cured of Wolbachia infection by tetracycline treatment.\|\|New cell lines derived from larvae of the neotropical fruit fly Drosophila willistoni persistently infected with Wolbachia.\|\|Fly\|\|[https://pubmed.ncbi.nlm.nih.gov/42332854 42332854 ]\|\|[https://flybase.org/reports/FBrf0265682 FBrf0265682]
		+	\|- bgcolor="lightgrey"
		+	\| Computational framework and open-source resource for connectome preprocessing, structural MDL analysis, neural dynamics, energy-information estimation, and eligibility-trace plasticity in the Drosophila optic lobe.\|\|Energy-efficient information processing and eligibility-trace plasticity in the Drosophila optic lobe connectome.\|\|Sci. Rep.\|\|[https://pubmed.ncbi.nlm.nih.gov/42156870 42156870 ]\|\|[https://flybase.org/reports/FBrf0265918 FBrf0265918]
		+	\|-
		+	\| UASz-Mgat2-V5-TurboID, a Golgi-targeted TurboID reporter that enables proximity labeling of Golgi-transiting secreted proteins and membrane proteins in Drosophila tissues.\|\|Proximal labeling of the Golgi secretome reveals fat body-derived humoral factors in Drosophila disc regeneration.\|\|J. Biol. Chem.\|\|[https://pubmed.ncbi.nlm.nih.gov/42208902 42208902 ]\|\|[https://flybase.org/reports/FBrf0265895 FBrf0265895]
		+	\|- bgcolor="lightgrey"
		+	\| This study provides a comprehensive single cell RNA-seq atlast of the midgut under wild type condition and under progenitor-specific Notch sgRNA condition. This study provides a protein-DNA interactions map using the NanoDam approach for Cph.\|\|Autoinhibitory feedback preserves intestinal stem cell maintenance and fate commitment.\|\|EMBO J.\|\|[https://pubmed.ncbi.nlm.nih.gov/42162240 42162240 ]\|\|[https://flybase.org/reports/FBrf0265817 FBrf0265817]
		+	\|-
		+	\| Ubi-CanlonicSF (BDSC stock numbers 607049-607050) stocks were generated. These are the same CanlonicSF construct as reported by Aburto et al (FBrf0255149), but with a Ubi promoter for Gal4-independent expression.\|\|Somatic cells compartmentalise their carbohydrate metabolism to sustain germ cell survival.\|\|EMBO J.\|\|[https://pubmed.ncbi.nlm.nih.gov/42243520 42243520 ]\|\|[https://flybase.org/reports/FBrf0265891 FBrf0265891]
		+	\|- bgcolor="lightgrey"
		+	\| Cortex Glial subtype specific split-Gal4 and Gal80 driver lines were generated. These include R54D10-Gal4.DBD, R54D10-nlsLexA.p65AD, R54D10- Gal80, R9F07-Gal4.DBD, R9F07-Gal80. We have also generated UAS-Cpes-HA, and UAS-Zyd-HA transgenic lines.\|\|Light- and temperature-sensitive seizures are regulated by spatially distinct cortex glial populations in the central nervous system.\|\|Proc. Natl. Acad. Sci. U.S.A.\|\|[https://pubmed.ncbi.nlm.nih.gov/42479834 42479834 ]\|\|[https://flybase.org/reports/FBrf0265904 FBrf0265904]
		+	\|-
		+	\| Developed an in vivo, screenable split-luciferase model of huntingtin multimerization in Drosophila. \|\|Development of an in vivo, screenable, split-luciferase based model of huntingtin multimerization.\|\|iScience\|\|[https://pubmed.ncbi.nlm.nih.gov/42436982 42436982 ]\|\|[https://flybase.org/reports/FBrf0265854 FBrf0265854]
		+	\|- bgcolor="lightgrey"
		+	\|}

	==== Jun 2026====		==== Jun 2026====