Difference between revisions of "FlyBase:Neuroscience"
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− | |style="text-align: center; padding: 15px;"| <big>[[FlyBase:External_Resources|All Resources]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:CRISPR|CRISPR]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:RNAi|RNAi]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Stocks|Stocks]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Antibodies|Antibodies]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Images|Images]]</big>||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Neuroscience|Neuroscience]]</big> | + | |style="text-align: center; padding: 15px;"| <big>[[FlyBase:External_Resources|All Resources]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:CRISPR|CRISPR]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:RNAi|RNAi]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Stocks|Stocks]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Antibodies|Antibodies]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Images|Images]]</big>||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Neuroscience|Neuroscience]]</big> ||style="text-align: center; padding: 20px;"| <big>[[FlyBase:Maps|Maps]]</big> |
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Revision as of 14:06, 1 October 2015
Popular Resource Categories
All Resources | CRISPR | RNAi | Stocks | Antibodies | Images | Neuroscience | Maps |
Databases of expression, anatomy and physiology
Resource | Description | Author/Source |
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BrainBase | Database of images and annotations of expression for VT and enhancer trap GAL4 lines | Barry Dickson Lab formerly at Institute of Molecular Pathology Vienna, Austria Biomedical Visualization Group VRVis Vienna, Austria |
BrainTrap | Database with expression of protein trap lines in the adult brain | Knowles-Barley et al., 2010 |
FlyBrain Neuron NDB | Database of neuron, strain, antibody and brain regions data. | Laboratory of Structural Information Institute of Molecular and Cellular Biosciences The University of Tokyo Tokyo, Japan |
FlyCircuit | Database for online archiving, cell type inventory, browsing, searching, analysis and 3D visualization of individual neuron images in the adult brain | Chiang et al., 2011 |
FlyLight GAL4 lines | Database of expression patterns of GAL4 and LexA driver lines from Janelia Research Campus | Janelia FlyLight Project Team Gerry Rubin Lab James Truman Lab Richard Mann Lab Chris Doe Lab Janelia Research Campus Virginia, USA |
FlyLight Split GAL4 lines | Database of expression patterns of Split GAL4 lines from Janelia Research Campus | Janelia FlyLight Project Team Gerry Rubin Lab Janelia Research Campus Virginia, USA |
Fly Trap | Database of classical P(GAL4) enhancer traps imaged in head sections | Armstrong Lab University of Edinburgh Edinburgh, UK |
DoOR | Database of odorant responses in Drosophila | Munch and Galizia, 2016 |
NeuroMorpho | Curated inventory of digitally reconstructed neurons associated with peer-reviewed publications | Ascoli et al., 2007 |
Insect Brain Database | Database of single neurons and brains for several insect species | Uwe Homberg Lab Randolf Menzel Lab Marie Dacke/Basil el Jundi Labs Bente Berg Lab Stanley Heinze Lab |
For viewing, analysing and querying images
Resource | Description | Author/Source |
---|---|---|
Virtual Fly Brain | Interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of Drosophila melanogaster | Milyaev et al., 2012 |
BrainGazer | Desktop interactive tool for advanced visualization and exploration of neural circuit data | Bruckner et al., 2009 |
NBLAST | Tool to search for similar neurons by morphology and location | Costa et al., 2014 |
Bridging registrations | This site provides the tools to transform image data from one template brain (adult Drosophila) to another, using a bridging registration. | Manton et al., 2014 |
Braincode | Automated segmentation of the Drosophila brain to identify "functional units" | Panser et al., 2015 |
Interactive maps
Resource | Description | Author/Source |
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FlyPNS | Description of embryonic and larval sensory organs of D. melanogaster in abdominal segments A1-A7 | Orgogozo and Grueber, 2005 |
Embryonic and larval neuroblasts and lineages | Interactive maps of the embryonic and larval neuroblasts and lineages | Christof Rickert University of Mainz Mainz, Germany |
Adult antennal lobe 3D model | 3D model of adult antennal lobe | Rybak et al., 2016 |
Nomenclature and protocols
Resource | Description | Author/Source |
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BrainName | Standard nomenclature of the adult brain | Ito et al., 2014 |
Immunostaining of adult brains | This protocol describes the dissection, staining, and imaging of adult brains from Drosophila with mosaic labeling | Ostrovsky et al., 2013 |
Image registration of adult brains | This protocol describes the practical steps required for an intensity-based nonlinear registration of the Drosophila brain using the staining for the presynaptic marker Bruchpilot (nc82) | Ostrovsky et al., 2013 |
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